First, you need to up the swordman skills first,
moving hp recover 10
bash 10
magnum break 10
provoke 10
endure max till 0 skill pt left,
then you will see the swordman part of the simulator showing 0 when there're supposed to be 4 more skill points,
(http://forum.ratemyserver.net/support/bug-in-royal-guard-skill-simulator/?action=dlattach;attach=4453;image)
then you add for crusader skills
pressure 1
peco mastery 5
spear quicken 10
faith 10
then straight you add inspiration 5 for Royal Guard, you'll see "Ray of Genesis" is 0/5 added to the skill tree, as for inspiration the prerequisite for Ray of Genesis is supposed to be 4/5. I'm not sure of my exact order of the swordman skills and crusader skills order will reproduce the bug, but if when you try it out it happens that you must follow a particular order when adding for those 2 lower jobs, try randomly the order to reproduce it. Btw, thx for a good skill simulator.
(http://forum.ratemyserver.net/support/bug-in-royal-guard-skill-simulator/?action=dlattach;attach=4455;image)
I tried ss 1 and ss2 built but cannot reproduce the error. This added up fine:
Increase Recuperative Power Lv 10
Bash Lv 10
Provoke Lv 10
Magnum Break Lv 10
Endure Lv 9
Moving HP Recovery Lv 1 (Quest Skill)
Fatal Blow Lv 1 (Quest Skill)
Auto Berserk Lv 1 (Quest Skill)
Spear Mastery Lv 10
Riding Lv 1
Cavalry Mastery Lv 5
Faith Lv 10
Auto Guard Lv 5
Shield Charge Lv 2
Spear Quicken Lv 10
Pressure Lv 1
Shrink Lv 1 (Quest Skill)
Total 1st job skill point used: 49/49 Left: 0 Over: 0
Total 2nd job skill point used: 44/69 Left: 25 Over: 0
Total 3rd job skill point used: 0/49 Left: 49 Over: 0
If you have been using the sim for a while without reset I do believe some of the math carrying/overhead could lead to error in certain cases. Try use the reset button but I suggest refresh the page to get it all fresh and try again.
That's weird. When I tested if I leveled the Royal Guard skills first it's ok, but if I level Swordsman skills to Crusader then Royal Guard there was that bug, however, when I try to reproduce it now, it doesn't happen anymore. However, it happened twice, first time was ~1- 2 days of heavy use, second time I could reproduce it by following the way I said in the first post. I couldn't reproduce it anymore.
Maybe it was the overhead thing you said happening even with reset, cause I did use reset alot of times.